Account Cloud Inc

Payroll Services

Running payroll every two weeks is not why you started a nonprofit

Grant-tracked staff, functional expense allocations, quarterly tax deposits — we handle it all, accurately and on time, so you can get back to your mission.

What's included

A nonprofit-only focus, not a generic business payroll model.

Payroll processing

Biweekly, weekly, or semi-monthly — direct deposit, pay stubs, and new hire onboarding handled.

Tax & compliance filings

Form 941, state withholding, FUTA/SUTA, and year-end W-2 and 1099-NEC preparation.

Multi-grant salary tracking

Staff time and pay allocated correctly across the grants that actually fund it.

Functional expense allocation

Payroll split across program, management, and fundraising — the way your Form 990 needs it.

A dedicated partner

Direct access to your payroll team, not a generic support queue.

Audit-ready records

Payroll records that reconcile cleanly with your accounting system, before your auditor ever asks.

Getting started

  1. 1

    Book a free payroll call

    Tell us your pay frequency, team size, and how many grants fund your staff.

  2. 2

    Get a flat monthly quote

    Pricing scoped to your team size, pay frequency, and funding complexity — no per-transaction fees.

  3. 3

    We take payroll off your plate

    Processing, filings, and multi-grant tracking, running on your existing schedule.

Common questions

How is nonprofit payroll different from standard payroll?+

It involves tracking salaries across multiple grants and allocating functional expenses between program, management, and fundraising — most generic payroll providers aren't built for that.

What is functional expense allocation, exactly?+

It's splitting a single payroll expense across program, management and general, and fundraising categories — required for accurate Form 990 reporting.

Which tax filings do you handle?+

Form 941, state withholding, FUTA/SUTA, and year-end W-2 and 1099-NEC preparation.

Can you track salaries across multiple grants?+

Yes — multi-grant salary tracking is built into how we process payroll, not a manual reconciliation after the fact.

How is this priced?+

A flat monthly fee scoped to the size of your team, your pay frequency, and the complexity of your funding structure — no hidden per-transaction costs.

Get payroll off your plate

Accurate, on-time, and reconciled with your books — without you managing the details.

Book a free payroll call

Prefer to talk it through first? Call us at 866-648-8408